She may just be stressed a bit from moving, and was startled when you woke them up. I'd recommend giving them a day or so to settle in and calm down and get used to their new home. But don't be afraid of her, the more you handle them, the more used to you they will become and I'm sure she will calm down soon!
Also, if there are mixed sexes, you should separate the boys from girls soon so they don't end up pregnant. It can happen at a surprisingly early age, haha.
Don't give up on your little girl, a bit of patience goes a LONG way!

Good luck! Let us know how it goes.