Bayle just needs to trust you more. At 9 weeks, a bunny is just excited to get out and run a mile in 10 seconds and explore his new surroundings. It's going to take some time to get him to calm down & want to be patted. Desexing at a later stage will help him calm down & be less flighty as well.
Not many bunnies like being picked up so you may just have to be happy with patting him. However, the more you interact with him & do pick him up, the easier it gets. Just don't force him to stay in the same spot if he wants to run & play as he'll only get scared of you & resent being picked up & cuddled.