I agree with the others...your little pup is a BABY.
She is young,misses her siblings and mother (puppies should not leave their mom's any earlier then 8 weeks and 12 weeks is better and reputable breeders will not let the pups go so under 8-12 weeks) and doesn't know what is right or wrong yet.
But don't be discouraged.Puppies take alot of patience and time and you are going to have some accidents,this is all normal with a puppy.Crate training and house training will take time and do not happen overnight.Puppies cannot hold their bladders for long periods of time and when they gotta go,they gotta go.
So what you should do is take the puppy out as soon as she wakes up,after a play session and after she eats/drinks and even in between that if she is sniffing around.When she does her buisness outside,praise her and you can give her a treat too...but praise often works well on it's own.
DO NOT rub her nose in her business at all,this can lead to submissive and aggressive behaviors and does not teach her anything.Also do not scold her if you find a mess,but didn't catch her in the act...because she won't understand what she has done wrong.
As for crate training,leave the crate where she can see you.Make the crate time a happy time (do not use it as punishment).Give her toys and treats (you mentioned you are doing this,so thats good).Also when she starts crying/whining,do not give her any attention...negative or positive,because she will realize that when she makes a fuss,she gets attention and ANY attention is attention,whether negative or positive.
Do not give up.You will have some sleepless nights and some frustrations,but this is the joy of puppyhood! Good luck!
* Lisa *
* To the world you are ONE person,but to a rat you are the world *
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* It's a rat thing...you wouldn't understand! *